Prior to joining UNL

  Articles:
  1. Saha, R., Liu, D., O'Connor, A.G., Liberton, M., Yu, J., Bhattacharyya, M., Balassy, A., Zhang, F., Moon, T.S., Maranas, C.D. and Pakrasi, H.B. (2016), “Diurnal Regulation of Cellular Processes in the Cyanobacterium Synechocystis sp. PCC 6803: Insights from Transcriptomic, Fluxomic and Physiological Analyses”, mBio, 7(3), e00464-16.

  2. Liberton, M., Saha, R., Jacobs, J. M., Nguyen, A.Y., Chrisler, W.B., Gritsenko, M.A., Smith, R.D., Koppenaal, D.W. and Pakrasi, H.B. (2016), “Proteomics analysis of isolated plasma membrane and thylakoid membrane from Synechocystis sp. PCC 6803”, Molecular and Cellular Proteomics, 15(6), 2021-2032.
  3. Berla, B.M., Saha, R., Maranas, C.D. and Pakrasi, H.B. (2015), “Cyanobacterial Alkanes Modulate Photosynthetic Cyclic Electron Flow to Assist Growth under Cold Stress”, Nature Scientific Reports, 5, doi: 10.1038/srep14894.
  4. Simons, M., Saha, R., Amiour, N., Kumar, A., Guillard, L, Clément, G., Miquel, M., Zheni, L., Mouille, G., Hirel, B. and Costas D. Maranas (2014), “Assessing the Metabolic Impact of Nitrogen Availability using a Compartmentalized Maize Leaf Genome-Scale Model”, Plant Physiology, 166: 1659-1674.
  5. Simons, M, Saha, R., Guillard, L., Clement, G., Armengaud, P., Canas, R, Maranas, C.D., Lea, P.J. and B. Hirel (2014), “Nitrogen-use efficiency in maize (Zea mays L.): from ‘omics’studies to metabolic modelling”, Journal of Experimental Botany, doi: 10.1093/jxb/eru227.
  6. Saha, R., Chowdhury, A. and C.D. Maranas (2014), "Recent advances in the reconstruction of metabolic models and integration of omics data", Current Opinion in Biotechnology, 29, 39-45.
  7. Berla, B.M., Saha, R., Immethun, C.D., Maranas, C.D., Moon, T.S. and Pakrasi, H.B. (2013), "Synthetic biology of cyanobacteria: unique challenges and opportunities", Frontiers in Microbiology, 4.
  8. Saha, R., A.T. Verseput, B.M. Berla, T.J. Mueller, H.B. Pakrasi and C.D.Maranas (2012), "Reconstruction and comparison of the metabolic potential of cyanobacteria Cyanothece sp. ATCC 51142 and Synechocystis sp. PCC 6803," PLoS ONE, 7(10): e48285.
  9. Saha, R., P.F. Suthers and C.D. Maranas (2011), "Zea mays iRS1563: A Comprehensive Genome-Scale Metabolic Reconstruction of Maize Metabolism.," PLoS ONE, 6(7):e21784.
  10. Lee, D.Y., Saha, R., Khan, Y.F.N., Park, W. and Karimi, I.A. (2009), “Web-based applications for building, managing and analyzing kinetic models of biological systems”, Briefings in Bioinformatics, 10(1): 65-74.
  11. Ahn, J., Lee, H., Saha, R., Park, M., Jung, J-K and Lee, D.Y. (2008), “Exploring the effects of carbon sources on the metabolic capacity for shikimic acid production in  Escherichia coli using in silico metabolic predictions”, Journal of microbiology and biotechnology, 18(11): 1773-1784.
Conference Proceedings:
  1. Saha, R., Suresh, S., Park, W., Lee, D.Y. and Karimi, I.A., “Microbial fuel cell in perspective of strain improvement and mediator selection”, Joint third AOHUPO and fourth structural biology and functional genomics conference, 2006, pp 290.
  2. Saha, R., Park, W, Lee., D.Y. and Karimi, I.A., “Comparison on web-based simulation tools of biochemical and cellular model in systems biology”, International conference on modeling in chemical and biological engineering sciences, 2006, pp. 10.
Oral Presentations
  1. Saha, R, Liu, D., Hoynes-O’Connor, A.G., Liberton, M., Yu, J., Bhattacharyya, M., Balassy, A., Moon, T.S., Maranas, C.D., Pakrasi, H.B., “Synechocystis Sp. PCC 6803: Light Plus Endogenous Regulation Governing Gene Expression Patterns in the Diurnal Cycle”, AIChE annual meeting, Salt Lake City, UT, Nov 8-13, 2015.
  2. Saha, R., Berla, B.M., Pakrasi, H.B. and Maranas, C.D., “Computations-driven optimization of alkane production in Synechocystis sp. PCC 6803”, AIChE annual meeting, Atlanta, GA, Nov 16-21, 2014.
  3. Saha, R., Simons, M., Kumar, A., Guillard, L., Hirel, B and Maranas, C.D., “Towards multi-tissue type metabolic modeling of maize”, AIChE annual meeting, San Francisco, CA, Nov 3-8, 2013.
  4. Saha, R., Berla, B.M., Mueller, T.J., Welkie, D.J., Sherman, L., Pakrasi, H.B. and Maranas, C.D., “Comparative genome-scale modeling of the metabolic potential of cyanobacteria Cyanothece sp. ATCC 51142 and Synechocystis sp. PCC6803”, 11th workshop on cyanobacteria, St. Louis, MO, Aug 7-11, 2013.
  5. Saha, R., Verseput, A.T., Mueller, T.J. and Maranas, C.D., “Contrasting the metabolic capabilities of cyanobacterial strains for assessing bio-production platform selection”, AIChE annual meeting, Pittsburgh, PA, Oct 28-Nov 2, 2012.
  6. Saha, R., Berla, B.M., Mueller, T.J., Elvitigala, T., Page, L.E., Pakrasi, H.B. and Maranas, C.D., “Contrasting the metabolic capabilities of cyanobacterial species for assessing bio-production platform selection”, ACS annual meeting, San Diego, CA, Mar 25-29, 2012.
  7. Saha, R., Berla, B.M., Elvitigala, T., Page, L.E., Pakrasi, H.B. and Maranas, C.D., “Contrasting the Metabolic Capabilities of Multiple Cyanobacterial Species”, AIChE annual meeting, Minneapolis, MN, Oct 16-21, 2011.
  8. Saha, R., Suthers, P.F. and Maranas, C.D., “Towards Genome-Scale Metabolic Reconstruction of Plant Metabolism”, AIChE annual meeting, Salt Lake City, UT, Nov 7-14, 2010.
  9. Saha, R., Park, W, Lee, D.Y. and Karimi, D.Y., “Comparison on web-based simulation tools of biochemical and cellular model in systems biology”, International conference on modeling in chemical and biological engineering sciences, Bangkok, Oct 25-27, 2006.
Poster Presentations
  1. Yu, J., Saha, R., Berla, B.M., Mueller, T.J., Kumar, A., Simons, M., Khodayari, A., Whitney Hollinshead, W., Abernathy, M., He, L., Tang, Y.J., Maranas, C.D., Pakrasi, H.B., “Systems Level Study of a Novel Fast-Growing Cyanobacterial Strain for Next- Generation Biofuel Production”, DOE genomic sciences meeting, Tysons, VA, Feb 22-25, 2015.
  2. Saha, R., Simons, M., Kumar, A., Guillard, L., Hirel, B and Maranas, C.D., “Assessing the Metabolic Impact of Nitrogen Availability using a Compartmentalized Maize Leaf Genome-Scale Model”, 3rd COBRA meeting, Winter Green, VA, May 20-23, 2014.
  3. Saha, R., Simons, M., Islam, M.M., Zomorrodi, A.R., Hirel, B and Maranas, C.D., “Metabolic modeling of multi tissue and multi organism systems”, DOE genomic sciences meeting, Crystal City, VA, Feb 10-12, 2014.
  4. Saha, R., Mueller, T.J., Berla, B.M., Pakrasi, B.M. and Marans, C.D., “Construction of metabolic models for a family of cyanobacteria”, DOE genomic sciences meeting, Bethesda, MD, Feb 24-27, 2013.
  5. Saha, R., Berla, B.M., Mueller, T.J., Elvitigala, T., Page, L.E., Pakrasi, H.B. and Maranas, C.D., “Contrasting the metabolic capabilities of Cyanothece sp. ATCC 51142 and Synechocystis sp. PCC6803”, DOE genomic sciences meeting, Bethesda, MD, Feb 26-29, 2012.
  6. Saha, R., Suthers, P.F. and Maranas, C.D., "Zea mays iRS1563: A Comprehensive Genome-Scale Metabolic Reconstruction of Maize Metabolism”, DOE genomic sciences meeting, Crystal City, VA, Apr 10-13, 2011.
  7. Saha, R., Suresh, S., Park, W., Lee, D.Y. and Karimi, I.A., “Microbial fuel cell in perspective of strain improvement and mediator selection”, Joint third AOHUPO and fourth structural biology and functional genomics conference, Singapore, Dec 4-7, 2006.
  8. Saha, R., Park, W, Lee., D.Y. and Karimi, D.Y., “Comparison on web-based simulation tools of biochemical and cellular model in systems biology”, Annual graduate students’ symposium, NUS, Singapore, Sep 24, 2006.